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	Backport https://github.com/go-gitea/gitea/pull/28794
Fixes #22236
---
Error occurring currently while trying to revert commit using read-tree
-m approach:
> 2022/12/26 16:04:43 ...rvices/pull/patch.go:240:AttemptThreeWayMerge()
[E] [63a9c61a] Unable to run read-tree -m! Error: exit status 128 -
fatal: this operation must be run in a work tree
> 	 - fatal: this operation must be run in a work tree
We need to clone a non-bare repository for `git read-tree -m` to work.
bb371aee6e
adds support to create a non-bare cloned temporary upload repository.
After cloning a non-bare temporary upload repository, we [set default
index](https://github.com/go-gitea/gitea/blob/main/services/repository/files/cherry_pick.go#L37)
(`git read-tree HEAD`).
This operation ends up resetting the git index file (see investigation
details below), due to which, we need to call `git update-index
--refresh` afterward.
Here's the diff of the index file before and after we execute
SetDefaultIndex: https://www.diffchecker.com/hyOP3eJy/
Notice the **ctime**, **mtime** are set to 0 after SetDefaultIndex.
You can reproduce the same behavior using these steps:
```bash
$ git clone https://try.gitea.io/me-heer/test.git -s -b main
$ cd test
$ git read-tree HEAD
$ git read-tree -m 1f085d7ed8 1f085d7ed8 9933caed00
error: Entry '1' not uptodate. Cannot merge.
```
After which, we can fix like this:
```bash
$ git update-index --refresh
$ git read-tree -m 1f085d7ed8 1f085d7ed8 9933caed00
```
		
	
		
			
				
	
	
		
			498 lines
		
	
	
		
			15 KiB
		
	
	
	
		
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			498 lines
		
	
	
		
			15 KiB
		
	
	
	
		
			Go
		
	
	
	
	
	
// Copyright 2019 The Gitea Authors. All rights reserved.
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// SPDX-License-Identifier: MIT
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package files
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import (
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	"context"
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	"fmt"
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	"io"
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	"path"
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	"strings"
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	"time"
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	"code.gitea.io/gitea/models"
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	git_model "code.gitea.io/gitea/models/git"
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	repo_model "code.gitea.io/gitea/models/repo"
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	user_model "code.gitea.io/gitea/models/user"
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	"code.gitea.io/gitea/modules/git"
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	"code.gitea.io/gitea/modules/lfs"
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	"code.gitea.io/gitea/modules/log"
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	"code.gitea.io/gitea/modules/setting"
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	"code.gitea.io/gitea/modules/structs"
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	asymkey_service "code.gitea.io/gitea/services/asymkey"
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)
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// IdentityOptions for a person's identity like an author or committer
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type IdentityOptions struct {
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	Name  string
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	Email string
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}
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// CommitDateOptions store dates for GIT_AUTHOR_DATE and GIT_COMMITTER_DATE
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type CommitDateOptions struct {
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	Author    time.Time
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	Committer time.Time
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}
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type ChangeRepoFile struct {
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	Operation     string
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	TreePath      string
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	FromTreePath  string
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	ContentReader io.Reader
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	SHA           string
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	Options       *RepoFileOptions
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}
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// ChangeRepoFilesOptions holds the repository files update options
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type ChangeRepoFilesOptions struct {
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	LastCommitID string
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	OldBranch    string
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	NewBranch    string
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	Message      string
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	Files        []*ChangeRepoFile
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	Author       *IdentityOptions
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	Committer    *IdentityOptions
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	Dates        *CommitDateOptions
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	Signoff      bool
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}
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type RepoFileOptions struct {
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	treePath     string
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	fromTreePath string
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	executable   bool
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}
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// ChangeRepoFiles adds, updates or removes multiple files in the given repository
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func ChangeRepoFiles(ctx context.Context, repo *repo_model.Repository, doer *user_model.User, opts *ChangeRepoFilesOptions) (*structs.FilesResponse, error) {
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	// If no branch name is set, assume default branch
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	if opts.OldBranch == "" {
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		opts.OldBranch = repo.DefaultBranch
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	}
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	if opts.NewBranch == "" {
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		opts.NewBranch = opts.OldBranch
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	}
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	gitRepo, closer, err := git.RepositoryFromContextOrOpen(ctx, repo.RepoPath())
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	if err != nil {
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		return nil, err
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	}
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	defer closer.Close()
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	// oldBranch must exist for this operation
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	if _, err := gitRepo.GetBranch(opts.OldBranch); err != nil && !repo.IsEmpty {
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		return nil, err
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	}
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	var treePaths []string
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	for _, file := range opts.Files {
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		// If FromTreePath is not set, set it to the opts.TreePath
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		if file.TreePath != "" && file.FromTreePath == "" {
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			file.FromTreePath = file.TreePath
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		}
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		// Check that the path given in opts.treePath is valid (not a git path)
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		treePath := CleanUploadFileName(file.TreePath)
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		if treePath == "" {
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			return nil, models.ErrFilenameInvalid{
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				Path: file.TreePath,
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			}
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		}
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		// If there is a fromTreePath (we are copying it), also clean it up
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		fromTreePath := CleanUploadFileName(file.FromTreePath)
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		if fromTreePath == "" && file.FromTreePath != "" {
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			return nil, models.ErrFilenameInvalid{
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				Path: file.FromTreePath,
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			}
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		}
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		file.Options = &RepoFileOptions{
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			treePath:     treePath,
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			fromTreePath: fromTreePath,
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			executable:   false,
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		}
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		treePaths = append(treePaths, treePath)
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	}
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	// A NewBranch can be specified for the file to be created/updated in a new branch.
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	// Check to make sure the branch does not already exist, otherwise we can't proceed.
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	// If we aren't branching to a new branch, make sure user can commit to the given branch
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	if opts.NewBranch != opts.OldBranch {
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		existingBranch, err := gitRepo.GetBranch(opts.NewBranch)
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		if existingBranch != nil {
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			return nil, git_model.ErrBranchAlreadyExists{
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				BranchName: opts.NewBranch,
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			}
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		}
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		if err != nil && !git.IsErrBranchNotExist(err) {
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			return nil, err
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		}
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	} else if err := VerifyBranchProtection(ctx, repo, doer, opts.OldBranch, treePaths); err != nil {
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		return nil, err
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	}
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	message := strings.TrimSpace(opts.Message)
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	author, committer := GetAuthorAndCommitterUsers(opts.Author, opts.Committer, doer)
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	t, err := NewTemporaryUploadRepository(ctx, repo)
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	if err != nil {
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		log.Error("%v", err)
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	}
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	defer t.Close()
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	hasOldBranch := true
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	if err := t.Clone(opts.OldBranch, true); err != nil {
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		for _, file := range opts.Files {
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			if file.Operation == "delete" {
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				return nil, err
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			}
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		}
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		if !git.IsErrBranchNotExist(err) || !repo.IsEmpty {
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			return nil, err
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		}
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		if err := t.Init(); err != nil {
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			return nil, err
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		}
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		hasOldBranch = false
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		opts.LastCommitID = ""
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	}
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	if hasOldBranch {
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		if err := t.SetDefaultIndex(); err != nil {
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			return nil, err
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		}
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	}
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	for _, file := range opts.Files {
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		if file.Operation == "delete" {
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			// Get the files in the index
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			filesInIndex, err := t.LsFiles(file.TreePath)
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			if err != nil {
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				return nil, fmt.Errorf("DeleteRepoFile: %w", err)
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			}
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			// Find the file we want to delete in the index
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			inFilelist := false
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			for _, indexFile := range filesInIndex {
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				if indexFile == file.TreePath {
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					inFilelist = true
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					break
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				}
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			}
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			if !inFilelist {
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				return nil, models.ErrRepoFileDoesNotExist{
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					Path: file.TreePath,
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				}
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			}
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		}
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	}
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	if hasOldBranch {
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		// Get the commit of the original branch
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		commit, err := t.GetBranchCommit(opts.OldBranch)
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		if err != nil {
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			return nil, err // Couldn't get a commit for the branch
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		}
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		// Assigned LastCommitID in opts if it hasn't been set
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		if opts.LastCommitID == "" {
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			opts.LastCommitID = commit.ID.String()
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		} else {
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			lastCommitID, err := t.gitRepo.ConvertToSHA1(opts.LastCommitID)
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			if err != nil {
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				return nil, fmt.Errorf("ConvertToSHA1: Invalid last commit ID: %w", err)
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			}
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			opts.LastCommitID = lastCommitID.String()
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		}
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		for _, file := range opts.Files {
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			if err := handleCheckErrors(file, commit, opts, repo); err != nil {
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				return nil, err
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			}
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		}
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	}
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	contentStore := lfs.NewContentStore()
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	for _, file := range opts.Files {
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		switch file.Operation {
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		case "create", "update":
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			if err := CreateOrUpdateFile(ctx, t, file, contentStore, repo.ID, hasOldBranch); err != nil {
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				return nil, err
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			}
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		case "delete":
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			// Remove the file from the index
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			if err := t.RemoveFilesFromIndex(file.TreePath); err != nil {
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				return nil, err
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			}
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		default:
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			return nil, fmt.Errorf("invalid file operation: %s %s, supported operations are create, update, delete", file.Operation, file.Options.treePath)
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		}
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	}
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	// Now write the tree
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	treeHash, err := t.WriteTree()
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	if err != nil {
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		return nil, err
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	}
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	// Now commit the tree
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	var commitHash string
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	if opts.Dates != nil {
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		commitHash, err = t.CommitTreeWithDate(opts.LastCommitID, author, committer, treeHash, message, opts.Signoff, opts.Dates.Author, opts.Dates.Committer)
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	} else {
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		commitHash, err = t.CommitTree(opts.LastCommitID, author, committer, treeHash, message, opts.Signoff)
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	}
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	if err != nil {
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		return nil, err
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	}
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	// Then push this tree to NewBranch
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	if err := t.Push(doer, commitHash, opts.NewBranch); err != nil {
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		log.Error("%T %v", err, err)
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		return nil, err
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	}
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	commit, err := t.GetCommit(commitHash)
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	if err != nil {
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		return nil, err
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	}
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	filesResponse, err := GetFilesResponseFromCommit(ctx, repo, commit, opts.NewBranch, treePaths)
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	if err != nil {
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		return nil, err
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	}
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	if repo.IsEmpty {
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		if isEmpty, err := gitRepo.IsEmpty(); err == nil && !isEmpty {
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			_ = repo_model.UpdateRepositoryCols(ctx, &repo_model.Repository{ID: repo.ID, IsEmpty: false, DefaultBranch: opts.NewBranch}, "is_empty", "default_branch")
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		}
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	}
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	return filesResponse, nil
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}
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// handles the check for various issues for ChangeRepoFiles
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func handleCheckErrors(file *ChangeRepoFile, commit *git.Commit, opts *ChangeRepoFilesOptions, repo *repo_model.Repository) error {
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	if file.Operation == "update" || file.Operation == "delete" {
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		fromEntry, err := commit.GetTreeEntryByPath(file.Options.fromTreePath)
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		if err != nil {
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			return err
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		}
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		if file.SHA != "" {
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			// If a SHA was given and the SHA given doesn't match the SHA of the fromTreePath, throw error
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			if file.SHA != fromEntry.ID.String() {
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				return models.ErrSHADoesNotMatch{
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					Path:       file.Options.treePath,
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					GivenSHA:   file.SHA,
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					CurrentSHA: fromEntry.ID.String(),
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				}
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			}
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		} else if opts.LastCommitID != "" {
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			// If a lastCommitID was given and it doesn't match the commitID of the head of the branch throw
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			// an error, but only if we aren't creating a new branch.
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			if commit.ID.String() != opts.LastCommitID && opts.OldBranch == opts.NewBranch {
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				if changed, err := commit.FileChangedSinceCommit(file.Options.treePath, opts.LastCommitID); err != nil {
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					return err
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				} else if changed {
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					return models.ErrCommitIDDoesNotMatch{
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						GivenCommitID:   opts.LastCommitID,
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						CurrentCommitID: opts.LastCommitID,
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					}
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				}
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				// The file wasn't modified, so we are good to delete it
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			}
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		} else {
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			// When updating a file, a lastCommitID or SHA needs to be given to make sure other commits
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			// haven't been made. We throw an error if one wasn't provided.
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			return models.ErrSHAOrCommitIDNotProvided{}
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		}
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		file.Options.executable = fromEntry.IsExecutable()
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	}
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	if file.Operation == "create" || file.Operation == "update" {
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		// For the path where this file will be created/updated, we need to make
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		// sure no parts of the path are existing files or links except for the last
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		// item in the path which is the file name, and that shouldn't exist IF it is
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		// a new file OR is being moved to a new path.
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		treePathParts := strings.Split(file.Options.treePath, "/")
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		subTreePath := ""
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		for index, part := range treePathParts {
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			subTreePath = path.Join(subTreePath, part)
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			entry, err := commit.GetTreeEntryByPath(subTreePath)
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			if err != nil {
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				if git.IsErrNotExist(err) {
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					// Means there is no item with that name, so we're good
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					break
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				}
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				return err
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			}
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			if index < len(treePathParts)-1 {
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				if !entry.IsDir() {
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					return models.ErrFilePathInvalid{
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						Message: fmt.Sprintf("a file exists where you’re trying to create a subdirectory [path: %s]", subTreePath),
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						Path:    subTreePath,
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						Name:    part,
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						Type:    git.EntryModeBlob,
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					}
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				}
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			} else if entry.IsLink() {
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				return models.ErrFilePathInvalid{
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					Message: fmt.Sprintf("a symbolic link exists where you’re trying to create a subdirectory [path: %s]", subTreePath),
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					Path:    subTreePath,
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					Name:    part,
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					Type:    git.EntryModeSymlink,
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				}
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			} else if entry.IsDir() {
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				return models.ErrFilePathInvalid{
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					Message: fmt.Sprintf("a directory exists where you’re trying to create a file [path: %s]", subTreePath),
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					Path:    subTreePath,
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					Name:    part,
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					Type:    git.EntryModeTree,
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				}
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						||
			} else if file.Options.fromTreePath != file.Options.treePath || file.Operation == "create" {
 | 
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				// The entry shouldn't exist if we are creating new file or moving to a new path
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				return models.ErrRepoFileAlreadyExists{
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					Path: file.Options.treePath,
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				}
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						||
			}
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						||
		}
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						||
	}
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	return nil
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}
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// CreateOrUpdateFile handles creating or updating a file for ChangeRepoFiles
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func CreateOrUpdateFile(ctx context.Context, t *TemporaryUploadRepository, file *ChangeRepoFile, contentStore *lfs.ContentStore, repoID int64, hasOldBranch bool) error {
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	// Get the two paths (might be the same if not moving) from the index if they exist
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	filesInIndex, err := t.LsFiles(file.TreePath, file.FromTreePath)
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						||
	if err != nil {
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						||
		return fmt.Errorf("UpdateRepoFile: %w", err)
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	}
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						||
	// If is a new file (not updating) then the given path shouldn't exist
 | 
						||
	if file.Operation == "create" {
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						||
		for _, indexFile := range filesInIndex {
 | 
						||
			if indexFile == file.TreePath {
 | 
						||
				return models.ErrRepoFileAlreadyExists{
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						||
					Path: file.TreePath,
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						||
				}
 | 
						||
			}
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						||
		}
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						||
	}
 | 
						||
 | 
						||
	// Remove the old path from the tree
 | 
						||
	if file.Options.fromTreePath != file.Options.treePath && len(filesInIndex) > 0 {
 | 
						||
		for _, indexFile := range filesInIndex {
 | 
						||
			if indexFile == file.Options.fromTreePath {
 | 
						||
				if err := t.RemoveFilesFromIndex(file.FromTreePath); err != nil {
 | 
						||
					return err
 | 
						||
				}
 | 
						||
			}
 | 
						||
		}
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						||
	}
 | 
						||
 | 
						||
	treeObjectContentReader := file.ContentReader
 | 
						||
	var lfsMetaObject *git_model.LFSMetaObject
 | 
						||
	if setting.LFS.StartServer && hasOldBranch {
 | 
						||
		// Check there is no way this can return multiple infos
 | 
						||
		filename2attribute2info, err := t.gitRepo.CheckAttribute(git.CheckAttributeOpts{
 | 
						||
			Attributes: []string{"filter"},
 | 
						||
			Filenames:  []string{file.Options.treePath},
 | 
						||
			CachedOnly: true,
 | 
						||
		})
 | 
						||
		if err != nil {
 | 
						||
			return err
 | 
						||
		}
 | 
						||
 | 
						||
		if filename2attribute2info[file.Options.treePath] != nil && filename2attribute2info[file.Options.treePath]["filter"] == "lfs" {
 | 
						||
			// OK so we are supposed to LFS this data!
 | 
						||
			pointer, err := lfs.GeneratePointer(treeObjectContentReader)
 | 
						||
			if err != nil {
 | 
						||
				return err
 | 
						||
			}
 | 
						||
			lfsMetaObject = &git_model.LFSMetaObject{Pointer: pointer, RepositoryID: repoID}
 | 
						||
			treeObjectContentReader = strings.NewReader(pointer.StringContent())
 | 
						||
		}
 | 
						||
	}
 | 
						||
 | 
						||
	// Add the object to the database
 | 
						||
	objectHash, err := t.HashObject(treeObjectContentReader)
 | 
						||
	if err != nil {
 | 
						||
		return err
 | 
						||
	}
 | 
						||
 | 
						||
	// Add the object to the index
 | 
						||
	if file.Options.executable {
 | 
						||
		if err := t.AddObjectToIndex("100755", objectHash, file.Options.treePath); err != nil {
 | 
						||
			return err
 | 
						||
		}
 | 
						||
	} else {
 | 
						||
		if err := t.AddObjectToIndex("100644", objectHash, file.Options.treePath); err != nil {
 | 
						||
			return err
 | 
						||
		}
 | 
						||
	}
 | 
						||
 | 
						||
	if lfsMetaObject != nil {
 | 
						||
		// We have an LFS object - create it
 | 
						||
		lfsMetaObject, err = git_model.NewLFSMetaObject(ctx, lfsMetaObject)
 | 
						||
		if err != nil {
 | 
						||
			return err
 | 
						||
		}
 | 
						||
		exist, err := contentStore.Exists(lfsMetaObject.Pointer)
 | 
						||
		if err != nil {
 | 
						||
			return err
 | 
						||
		}
 | 
						||
		if !exist {
 | 
						||
			if err := contentStore.Put(lfsMetaObject.Pointer, file.ContentReader); err != nil {
 | 
						||
				if _, err2 := git_model.RemoveLFSMetaObjectByOid(ctx, repoID, lfsMetaObject.Oid); err2 != nil {
 | 
						||
					return fmt.Errorf("unable to remove failed inserted LFS object %s: %v (Prev Error: %w)", lfsMetaObject.Oid, err2, err)
 | 
						||
				}
 | 
						||
				return err
 | 
						||
			}
 | 
						||
		}
 | 
						||
	}
 | 
						||
 | 
						||
	return nil
 | 
						||
}
 | 
						||
 | 
						||
// VerifyBranchProtection verify the branch protection for modifying the given treePath on the given branch
 | 
						||
func VerifyBranchProtection(ctx context.Context, repo *repo_model.Repository, doer *user_model.User, branchName string, treePaths []string) error {
 | 
						||
	protectedBranch, err := git_model.GetFirstMatchProtectedBranchRule(ctx, repo.ID, branchName)
 | 
						||
	if err != nil {
 | 
						||
		return err
 | 
						||
	}
 | 
						||
	if protectedBranch != nil {
 | 
						||
		protectedBranch.Repo = repo
 | 
						||
		globUnprotected := protectedBranch.GetUnprotectedFilePatterns()
 | 
						||
		globProtected := protectedBranch.GetProtectedFilePatterns()
 | 
						||
		canUserPush := protectedBranch.CanUserPush(ctx, doer)
 | 
						||
		for _, treePath := range treePaths {
 | 
						||
			isUnprotectedFile := false
 | 
						||
			if len(globUnprotected) != 0 {
 | 
						||
				isUnprotectedFile = protectedBranch.IsUnprotectedFile(globUnprotected, treePath)
 | 
						||
			}
 | 
						||
			if !canUserPush && !isUnprotectedFile {
 | 
						||
				return models.ErrUserCannotCommit{
 | 
						||
					UserName: doer.LowerName,
 | 
						||
				}
 | 
						||
			}
 | 
						||
			if protectedBranch.IsProtectedFile(globProtected, treePath) {
 | 
						||
				return models.ErrFilePathProtected{
 | 
						||
					Path: treePath,
 | 
						||
				}
 | 
						||
			}
 | 
						||
		}
 | 
						||
		if protectedBranch.RequireSignedCommits {
 | 
						||
			_, _, _, err := asymkey_service.SignCRUDAction(ctx, repo.RepoPath(), doer, repo.RepoPath(), branchName)
 | 
						||
			if err != nil {
 | 
						||
				if !asymkey_service.IsErrWontSign(err) {
 | 
						||
					return err
 | 
						||
				}
 | 
						||
				return models.ErrUserCannotCommit{
 | 
						||
					UserName: doer.LowerName,
 | 
						||
				}
 | 
						||
			}
 | 
						||
		}
 | 
						||
	}
 | 
						||
	return nil
 | 
						||
}
 |